Category: "Job Notes"

AnnoTrack: Rails System

January 31st, 2011
This document is part of the administrator documentation for the AnnoTrack software for genome annotation tracking. To understand the code underlying specific web pages it is helpful to check the routing entries in config/routes.rb and vendor/plugi… more »

AnnoTrack: General Documentation

January 31st, 2011
Setting up a new system & adjusting it to your needs The system is flexible enough to be of use for other groups and projects performing genome annotation in a collaborative effort and is therefor provided here. These are notes on how to start a… more »

AnnoTrack: Web-Server

January 27th, 2011
AnnoTrack is a Ruby-On-Rails application with is executed by an Apache2 server with the mod-rails (Passenger) plugin. It is living on virtual machines (VM) where we don't run any other services as rails does not play nice with other web-services. The… more »

Submitting to EMBLdb

January 24th, 2011
To submit DNA sequences from capillary (Sanger) sequencing to the public EMBL database, these steps can be take: Webin submission page: http://www.ebi.ac.uk/embl/Submission/webin.html -> create 1 submission (Hx2000011028), send the rest in batch… more »

Sequence Contaminations

January 20th, 2011
A contaminated sequence is one that does not faithfully represent the genetic information from the biological source organism/organelle because it contains one or more sequence segments of foreign origin. [NCBI The primary approach to screening nucle… more »