Categories: "EnsEMBL" or "GeneBuild"

Using BioMart

February 29th, 2008
Using the Biomart perl API check out code: cvs -d :pserver:cvsuser@cvs.sanger.ac.uk:/cvsroot/biomart login cvs -d :pserver:cvsuser@cvs.sanger.ac.uk:/cvsroot/biomart co -r release-0_6 biomart-perl configure: additional perl modules: CGI-Session,… more »

Different EnsEMBL routines

February 22nd, 2008
Useful bits of perl code to work with the EnsEMBL API Use the registry & get variation information: use Bio::EnsEMBL::Registry; my $reg = 'Bio::EnsEMBL::Registry'; my $host= 'ensembldb.ensembl.org'; my $user= 'anonymous'; $reg->load_re… more »

EnsEMBL db Installation

January 14th, 2008
A few notes about setting up a local EnsEMBL system (database and API) more »