Category: "Other technology"

Ruby on Rails (intro level)

April 23rd, 2008
General and Mac OSX Leopard specific notes about the Ruby language and the Rails framework Ruby is a object-oriented interpreted language written on C. It is dynamic, reflective and supports multiple programming paradigms. [Wiki] Ruby is said to fol… more »

Proserver features

April 13th, 2008
When serving data in the DAS protocol using the Proserver, the features command will call a build_features function of the appropriate source adapter. It is passed one of: { 'segment' => $, 'start' => $, 'end' => $ } { 'feature_id' => $ }… more »

GFF Format

April 3rd, 2008
Information about working with the Generic (General) Feature Format GFF is a file format used for describing genes and other features of DNA, RNA and protein sequences. It's useful for describing the localization of elements in the genome. The latest… more »

Using BioMart

February 29th, 2008
Using the Biomart perl API check out code: cvs -d :pserver:cvsuser@cvs.sanger.ac.uk:/cvsroot/biomart login cvs -d :pserver:cvsuser@cvs.sanger.ac.uk:/cvsroot/biomart co -r release-0_6 biomart-perl configure: additional perl modules: CGI-Session,… more »