Search

100%
The Distributed Annotation System allows to share data across servers and applications. Example SourceAdaptor for Proserver DAS sources (complying to GENCODE format.) Example 1: Reading data from GFF file package Bio::Das::ProServer::SourceA…
Created by on 28/01/09
46%
DAS (Category)
 
46%
Aminosäuren sind organischer Verbindungen mit mindestens einer Carboxygruppe (–COOH) und einer Aminogruppe (–NH2), die eine essentielle Rolle für das Leben auf der Erde spielen. Sie sind die Bausteine der Proteine (Eiweisse), die die Körper aufbauen und an fast allen biochemischen Vorgängen im Körper beteiligt.
Created by on 08/01/08
29%
When serving data in the DAS protocol using the Proserver, the features command will call a build_features function of the appropriate source adapter. It is passed one of: { 'segment' => $, 'start' => $, 'end' => $ } { 'feature_id' => $ }…
Created by on 13/04/08
29%
Installing and Running Proserver to serve data via DAS The Distributed Annotation System (DAS) is an elegant way of sharing data and using data from diverse sources. More information at http://www.biodas.org and on these blog pages. The Proserver is a…
Created by on 02/11/09
21%
Setting up a new system & adjusting it to your needs The system is flexible enough to be of use for other groups and projects performing genome annotation in a collaborative effort and is therefor provided here. These are notes on how to start a…
Created by on 31/01/11
14%
GENCODE (Post)
GENCODE is a scientific project in the area of genome research. Research Goal: Annotate gene features across the human genome using computational methods, manual annotation, and targeted experiments as part of the ENCODE project. Grant proposal: Tim…
Created by on 28/02/08
14%
The phase (or sometimes called frame) gives information on how to translate individual parts of a gene, the coding exons. Phases 1 & 2 have a different definition in GFF and EnsEMBL format! In EnsEMBL, the phase is defined for exon objects like this:…
Created by on 17/04/08
14%
CCDS (Post)
The Consensus CoDing Sequence (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The long term goal is to support convergence towards a standard…
Created by on 21/04/08
14%
Regular updates The following Perl scripts update the data and re-set priorities and flags. They usually update Havana annotation data, but all other sources can be checked as well by activating the entry in the config file. They run as cron-job every night, but can also be run manually if needed. The cron-job is executed from svn/gencode/tracking_system/perl/scripts/cron_jobs.pl. Common parameters are:
Created by on 08/12/09
14%
The karyotype (number and set-up of the chromosomes) of a person or any changes in specific regions on human chromosomes are described with a system of numbers and symbols, defined by a group of cytogentic experts as the International System for Human C…
Created by on 06/09/11
4%
codes useful when you need to escape specific ASCII characters: Char Octal Dec Hex Description SP 40 32 20 Space ! 41 33 21 Exclamation mark " 42 34 22 Quotation mark (" in HTML) # 43 35 23 Cross hatch (number sign) $ 44 36 24 Dollar…
Created by on 29/02/08
4%
As the largest cloud computing company Amazon Web Services (AWS) offers various options to use compute-power on a "as-needed" basis. You can choose what size and type of machine, what number of machines - and you can choose a price model where you are…
Created by on 13/04/17
4%
As part of the health assessment of newborn babys, a test for common genetic conditions is done by drawing a few drops of blood from the heel of the baby and sending this off for analysis. Any positive results will then be followed up by confirmatory…
Created by on 13/04/17